Effects of different carbon sources on growth and active component contents in Salvia miltiorrhiza and S. castanea f. tomentosa hairy roots / 中国中药杂志

Salvia miltiorrhiza(Sm) and Salvia castanea f. tomentosa(Sc) hairy roots were used as experimental materials to study the effects of six different carbon sources, galactose, fructose, lactose, glucose, arabinose and sucrose(control), on fresh weight, dry weight, contents and yields of salvianolic acids and tanshinones. The results showed that galactose was most beneficial to the growth of two kinds of hairy roots, while lactose and arabinose were not conducive to their growth. As for Sm hairy roots, fructose significantly promoted the accumulation of salvianolic acid B, and the content increased by 5.801 times and 10.151 times compared with the control group, respectively. Glucose significantly promoted the accumulation of salvianolic acids. The content and yield of rosmarinic acid were 7.674 times and 9.260 times of that of the control group, and the content and yield of salvianolic acid B were 5.532 times and 6.675 times of the control group. For the hairy roots of Sc, galactose significantly increased the content and yield of rosmarinic acid, reaching 7.820 times and 9.944 times of the control group, respectively. Fructose promoted the increase of the content and yield of cryptotanshinone, reaching 9.242 times and 6.609 times of the control group, respectively. The study confirmed the optimal carbon source for the hairy root culture of Sm and Sc, and provided theoretical guidance for large-scale production of Sm drug-derived components and the utilization of Sc.

Trophic structure of a floodplain fish assemblage in the upper Amazon basin, Bolivia / Estructura trófica de un ensamblaje de peces en la cuenca alto-Amazónica, Bolivia

Abstract Amazonian fish assemblages are typically high in species diversity and trophic complexity. Stable isotopes are valuable tools to describe the trophic structure of such assemblages, providing useful information for conservation and ecological management. This study aimed at estimating the relative contribution of the different basal carbon sources to the diet of primary consumer fishes (herbivores and detritivores), and determining the trophic position (TP) of the dominant fishes from each trophic guild (herbivores, detritivores, invertivores and piscivores). For this purpose we analyzed stable isotope ratios of carbon (δ13C) and nitrogen (δ15N) in potential food sources, and muscle tissue of fishes in five oxbow lakes located in the floodplain of River Ichilo, Bolivia. Terrestrial plants and C3 aquatic macrophytes were the major carbon source contributing to the diet of herbivorous fishes, whereas particulate organic matter (POM) contributed more to the diet of detritivore fishes. In general, C4 aquatic macrophytes contributed little to the diet of herbivores and detritivores. However, we found a relatively high contribution of C4 macrophytes (28 %) to the diet of the herbivores Mylossoma duriventre and Schizodon fasciatus. We found a good agreement between our estimated TP values and the trophic group assigned based on diet composition from literature. The herbivore M. duriventre was at the bottom of the food web, being the baseline organism (TP = 2). The remaining primary consumers (herbivores and algivore/detritivores) exhibited relatively high TP values (2.3-2.9), probably due to their opportunistic feeding behavior. Omnivore/invertivore species studied displayed TP values near the 3.0 value expected for secondary consumers. Piscivore fishes were at the top TP, with TP values varying from 3.3 (Serrasalmus spilopleura and Serrasalmus rhombeus) to 3.8 (Pseudoplatystoma fasciatum). The fact that detritivore fishes, the most abundant food source for piscivores, occupy relatively high TPs determines that food chains in these particular Amazonian floodplains are longer than previously thought. Rev. Biol. Trop. 66(3): 1258-1271. Epub 2018 September 01.

Resumen Los ensamblajes de peces amazónicos presentan alta diversidad y complejidad trófica. La descripción de su estructura trófica proporciona información útil para su manejo. Con el fin de estimar la contribución de las fuentes básicas de carbono en la dieta de los consumidores primarios, y determinar la posición trófica (PT) de las especies dominantes de peces de cada gremio, analizamos isótopos estables de carbono (δ13C) y nitrógeno (δ15N) en las fuentes de carbono y en músculo de peces, de la llanura de inundación del río Ichilo. Las plantas terrestres y las macrófitas C3 fueron las mayores fuentes de carbono en la dieta de los peces herbívoros, mientras que la materia orgánica particulada contribuyó más a la dieta de los detritívoros. Las macrófitas C4 contribuyeron poco a la dieta de herbívoros y detritívoros, excepto para Mylossoma duriventre y Schizodon fasciatus, en las que encontramos una contribución relativamente alta (28 %). Encontramos una buena relación entre los valores estimados de PT y el gremio trófico asignado en la literatura. El herbívoro M. duriventre estuvo en la base de la red trófica (PT = 2). Los restantes consumidores primarios mostraron valores de PT relativamente altos (2.3 - 2.9), probablemente debido a sus hábitos alimenticios oportunistas. Las especies omnívoras/invertívoras mostraron valores cercanos a 3. Los peces piscívoros estuvieron en la cima de la red trófica, con PT que variaron entre 3.3 (Serrasalmus spilopleura y Serrasalmus rhombeus) y 3.8 (Pseudoplatystoma fasciatum). Estos datos sugieren que las cadenas tróficas en llanuras de inundación amazónicas, son más largas de lo que se suponía.

Divergence in energy sources for Prochilodus lineatus (Characiformes: Prochilodontidae) in Neotropical floodplains

The stable carbon isotopic variability and the contributions of autochthonous (sediment microbial biomass, phytoplankton, and periphyton) and allochthonous (soil microbial biomass) sources available to the detritivorous fish Prochilodus lineatus were investigated in three environments of the floodplain of the Upper Paraná River. The isotopic composition of carbon sources and fish varied significantly among the studied environments. The autochthonous resources, represented by the phytoplankton, were the most assimilated by the species, followed by periphyton and sediment microbial biomass. The species used the sources differently in each environment. This study suggests that the inherent characteristics of this area, as well as the size of the watershed, the dry season, anthropogenic actions, and phytoplankton productivity, favor the use of autochthonous resources by the species studied. Therefore, studies in the floodplain should employ an eco-hydrological approach that quantifies the magnitude of energy subsidies, as well as an access route to consumers, knowledge about the selectivity of detritivorous species and the effects of different land uses.(AU)

A variabilidade isotópica e as contribuições autóctones (biomassa microbiana do sedimento, fitoplâncton e perifíton) e alóctone (biomassa microbiana do solo) assim como as principais fontes de carbono para o peixe detritívoro Prochilodus lineatus foram investigadas em três diferentes ambientes, da planície de inundação do alto rio Paraná. A composição isotópica das fontes de carbono e dos consumidores variaram significativamente entre os ambientes estudados, e os recursos alóctones, representados pelo fitoplâncton, foram os mais utilizados pela espécie, seguido pelo perifíton e biomassa do sedimento microbiano. A espécie utilizou fontes de carbono distintas em cada ambiente. Este estudo sugere que características inerentes a cada ambiente, assim como o tamanho do ambiente, o período de seca, ações antropogênicas e produtividade do fitoplâncton favorecem o uso dos recursos alóctones pela espécie estudada. Portanto, estudos na planície de inundação devem empregar uma abordagem eco-hidrológicas que quantifique a magnitude dos subsídios energéticos, bem como as vias energéticas aos consumidores, o conhecimento acerca da seletividade das espécies de detritívoros e o efeito dos diferentes usos da terra.(AU)

An overview of biotechnological production of propionic acid: from upstream to downstream processes

The increasing demand for propionic acid (PA) production and its wide applications in several industries, especially the food industry (as a preservative and satiety inducer), have led to studies on the low-cost biosynthesis of this acid. This paper gives an overview of the biotechnological aspects of PA production and introduces Propionibacterium as the most popular organism for PA production. Moreover, all process variables influencing the production yield, different simple and complex carbon sources, the metabolic pathway of production, engineered mutants with increased productivity, and modified tolerance against high concentrations of acid have been described. Furthermore, possible methods of extraction and analysis of this organic acid, several applied bioreactors, and different culture systems and substrates are introduced. It can be concluded that maximum biomass and PA production may be achieved using metabolically engineered microorganisms and analyzing the most significant factors influencing yield. To date, the maximum reported yield for PA production is 0.973 g·g-1, obtained from Propionibacterium acidipropionici in a three-electrode amperometric culture system in medium containing 0.4 mM cobalt sepulchrate. In addition, the best promising substrate for PA bioproduction may be achieved using glycerol as a carbon source in an extractive continuous fermentation. Simultaneous production of PA and vitamin B12 is suggested, and finally, the limitations of and strategies for competitive microbial production with respect to chemical process from an economical point of view are proposed and presented. Finally, some future trends for bioproduction of PA are suggested.

Morphophysiological characterization of rhizobia isolated from wild genotypes of the common bean / Caracterização morfofisiológica de rizóbios isolados de genótipos silvestres de feijoeiro-comum

This study aimed to characterize, based on the morphology and on the use of carbon sources, rhizobial isolates obtained from nodules of wild common bean genotypes cultivated on soil samples from the states of Goiás, Minas Gerais and Paraná. Based on morphological and carbon source use, similarity matrixes were generated to perform clustering analysis based on the Jaccard index. A total of 523 isolates were obtained with the predominance of isolates that acidify the culture medium and showed fast growth. Isolates from the soils of Araucária and Prudentópolis produced a greater amount of mucus than those from Jussara, Nova Veneza, Uberlândia and Unaí soils. The rhizobia isolates obtained from soils of Goiás and Minas Gerais showed greater phenotypic diversity than those from the soils of Paraná. Analysis based on the use of different carbon sources revealed that rhizobia isolates obtained from soils of Goiás have higher metabolic diversity. Overall, the most part of isolates grouped with the reference strains, especially with the Rhizobium tropici and R. freirei strains used as inoculants for the common bean.

O objetivo deste trabalho foi caracterizar, com base em características morfológicas e quanto ao uso de fontes de C, isolados de rizóbio obtidos de genótipos silvestres de feijoeiro-comum cultivados em amostras de solo dos Estados de Goiás, Minas Gerais e Paraná. A partir das informações foram geradas matrizes de similaridade, usadas para análise de agrupamento por dendrogramas de similaridade, com base no coeficiente de Jaccard. Foram obtidos 523 isolados com predominância de isolados que acidificaram o meio de cultivo e de crescimento rápido, sendo que os provenientes de solos de Araucária e Prudentópolis produziram maior quantidade de muco que os de Jussara, Nova Veneza, Uberlândia e Unaí. Os isolados de rizóbios obtidos de solos do estado de Goiás e Minas Gerais apresentaram maior diversidade fenotípica do que aqueles oriundos de solos do Paraná. A análise de uso de fontes de C revelou que os isolados de rizóbios obtidos de solos do estado de Goiás apresentaram maior diversidade metabólica. De forma geral, a maior parte dos isolados agrupou com as estirpes-padrão, especialmente com as estirpes de Rhizobium tropici e R. freirei usadas como inoculante do feijoeiro-comum.

Possibility of using apple pomaces in the process of propionic-acetic fermentation

Background: In 2014, apple production in EU countries amounted to 11.8 million tonnes. A constant increase in the production of these fruits will lead to the accumulation of thousands of tonnes of apple pomace (production waste). The amount of industrial apples is the highest - their proportiononthe market is estimated at 50-60%, of which over 95% is processed into juice. The proportion of pomace in the traditional pressing method accounts for 20% offruits used. Results: Analysis of the growth dynamics of wild strain Propionibacterium freudenreichii T82 in micro-cultures using different carbon sources showed that the highest bacterial growth occurs in an environment with fructose and the most intense biosynthesis of metabolites was found in medium containing only saccharose. It has been found that P. freudenreichii T82 used apple pomaces as a source of carbon. Propionic acid biosynthesis reached its maximum value in the 120th hour of cultivation (1.771 g/L). At this time, the content of the acetic acid produced reached the level of 7.049 g/L. Conclusions: Utilization of by-products is a significant challenge for manufacturing sites and the natural environment. The solution to this problem may involve the use of pomace as a medium component for microorganism cultivation, which is a source of industrially useful metabolites. This study examined the possibility of using apple pomace as a carbon source in the process of propionic-acetic fermentation via wild strain Propionibacterium freudenreichii T82 bacteria.

Effect of Trichoderma longbrachiatum T2 on functional diversity of cucumber rhizomicrobes.

After biocontrol Trichoderma longbrachiatum T2 was applied in the rhizosphere of cucumber, the functional diversity of the rhizomicrobes utilizing carbon sources was investigated by using Biolog Eco-microplates technique. The result showed that T. longbrachiatum T2 had a significant effect on the rhizomicrobes in terms of their metabolic activity and their capacity to utilize carbon sources. The ability of the rhizomicrobes to utilize carbon sources was enhanced at seedling stage. The significant change of the richness and the degrees of the rhizomicrobes occured at seedling stage, flowering stage, and final stage, while no obvious difference was observed at fruiting stage. Principal Component Analysis (PCA) indicated that the ability of the rhizomicrobes to utilize carbon sources was enhanced at seedling stage and final stage. At flowering stage, the ability to utilize carbohydrates, amino acids, carboxylic acids, amines and phenolic compounds was reduced, but the ability to untilize polymers was slightly enhanced. The ability to utilize carbohydrates, amino acids, carboxylic acids, polymers and amines was enhanced, but the ability to utilize phenolic compounds was reduced at fruiting stage.

Efecto de nutrientes sobre la producción de biomasa del hongo medicinal Ganoderma lucidum / Effect of nutrients in the biomass production of the medicinal mushroom Ganoderma lucidum

El hongo Ganoderma lucidum, en los constituyentes de su biomasa, tiene compuestos con propiedades benéficas para la salud; es por esto que el conocimiento de las condiciones nutricionales adecuadas para su crecimiento permitirá su producción industrial y a bajo costo. En este trabajo se evaluó a nivel de matraz el efecto de la relación C/N, y la presencia de diferentes fuentes de carbono, nitrógeno y micronutrientes sobre la producción de biomasa. Empleando glucosa y peptona como fuentes de carbono y nitrógeno, respectivamente, se encontró una relación C/N óptima de 16,7:1 para la cual la máxima producción de biomasa fue de 25 g/L. Manteniendo esta relación C/N, y sustituyendo la glucosa por lactosa o harina de cebada y la peptona por extracto de levadura, la producción de biomasa se incrementó a 35 g/L. En presencia de harina de cebada la adición al medio de cultivo de sales de Mg y K, y de tiamina, no generó un mayor incremento en la producción de biomasa. La producción de biomasa de G. lucidum se ve favorecida por la presencia en el medio de cultivo de relaciones C/N cercanas a las reportadas conforme a la composición típica de los hongos, así como por la presencia de sustratos complejos como la harina de cebada que le aportan además de la fuente de carbono micronutrientes necesarios para su desarrollo.

Ganoderma lucidum fungus has some biomass components with beneficial health properties. The knowledge about its nutritionals requirements for growing will favor its industrial production at lower cost. In this work, the effect of C/N ratio, the presence of different carbon, nitrogen and micronutrients sources, on fungal biomass production, were evaluated. Using glucose and peptone as carbon and nitrogen sources, respectively, an optimal C/N ratio of 16,7:1 was found, for which the maximal biomass production was 25 g/L. Replacing glucose by lactose or barley flour and peptone by yeast extract at the same C/N ratio, the biomass production was enhanced to 35 g/L. With barley flour in the culture medium, the presence of Mg and K salts and thiamine did not turn out into a major increase of biomass. The G. lucidum biomass production is promoted by C/N ratios in the culture medium nearly equivalent to that found in the fungus, as well as the presence of complex substrates as barley flour which, additionally, contributes with important micronutrients along with the carbon source.

Accumulation of ammonia in culture broth by wild-type nitrogen-fixing bacterium, stenotrophomonas maltophilia.

Stenotrophomonas maltophilia was isolated from paddy field of Kyaukse District, Mandalay Division, Myanmar. Nitrogen fixing activity of S. maltophilia was detected in nitrogen free mineral medium supplemented with different carbon sources. S. maltophilia accumulated highest amounts of ammonia in glucose supplemented medium. But their nitrogen fixing activity was best at 0.7% glucose concentration. When 0.5609 ppm of glucose still remained in the medium after 24 hours incubation, no ammonia was detected. After incubation of 32 hours, ammonia began to accumulate and the amount of 0.5 ppm of ammonia was detected but no sugar remained in the medium. Highest amount of ammonia (2 ppm) was accumulated in the medium after 48 hour incubation. So we found that ammonium accumulation began when no sugar remained in the medium, supposing that sugar plays a key role in ammonia accumulation.

Evaluation of cytochrome P-450 concentration in Saccharomyces cerevisiae strains / Avaliação do citocromo P-450 na concentração de estirpes de Saccharomyces cerevisiae

Saccharomyces cerevisiae has been widely used in mutagenicity tests due to the presence of a cytochrome P-450 system, capable of metabolizing promutagens to active mutagens. There are a large number of S. cerevisiae strains with varying abilities to produce cytochrome P-450. However, strain selection and ideal cultivation conditions are not well defined. We compared cytochrome P-450 levels in four different S. cerevisiae strains and evaluated the cultivation conditions necessary to obtain the highest levels. The amount of cytochrome P-450 produced by each strain varied, as did the incubation time needed to reach the maximum level. The highest cytochrome P-450 concentrations were found in media containing fermentable sugars. The NCYC 240 strain produced the highest level of cytochrome P-450 when grown in the presence of 20 percent (w/v) glucose. The addition of ethanol to the media also increased cytochrome P-450 synthesis in this strain. These results indicate cultivation conditions must be specific and well-established for the strain selected in order to assure high cytochrome P-450 levels and reliable mutagenicity results.

Linhagens de Saccharomyces cerevisiae tem sido amplamente empregadas em testes de mutagenicidade devido à presença de um sistema citocromo P-450 capaz de metabolizar substâncias pró-mutagênicas à sua forma ativa. Devido à grande variedade de linhagens de S. cerevisiae com diferentes capacidades de produção de citocromo P-450, torna-se necessária a seleção de cepas, bem como a definição das condições ideais de cultivo. Neste trabalho, foram comparados os níveis de citocromo P-450 em quatro diferentes linhagens de S. cerevisiae e avaliadas as condições de cultivo necessárias para obtenção de altas concentrações deste sistema enzimático. O maior nível enzimático foi encontrado na linhagem NCYC 240 em presença de 20 por cento de glicose (p/v). A adição de etanol ao meio de cultura também produziu um aumento na síntese de citocromo P-450. Estes resultados indicam que as condições de cultivo devem ser específicas e bem definidas para a linhagem selecionada, garantindo assim elevados níveis de citocromo P-450 e, conseqüentemente, a confiabilidade nos testes de mutagenicidade.

Influence of different carbon sources on exopolysaccharide production by Lactobacillus delbrueckii subsp. bulgaricus (B3, G12) and Streptococcus thermophilus (W22)

Exopolysaccharides (EPSs) production was studied by Lactobacillus delbrueckii subsp. bulgaricus (B3, G12) and Streptococcus thermophilus (W22) in the medium containing various carbon sources (glucose, fructose, sucrose or lactose). For all the strains, glucose was the most efficient carbon source and B3, G12 and W22 strains produced 211, 175 and 120 EPS mg/L respectively. Also, the influence of different concentrations of glucose (5,10,15,20,25,30 g/L) on EPS production and growth was studied. The results indicated that EPS production and growth were stimulated by the high glucose concentration (30 g/L).

Effect of Different Carbon Sources on Succinic Acid Production of Actinobacillus succinogenes and Metabolic Flux Analysis / 微生物学通报

In anaerobic bottles fermentation,glucose,fructose,xylose,lactose,maltose,sucrose and sugar alcohols could be used to produce succinic acid with Actinobacillus succinogenes. When sorbitol was utilized as the carbon source in the batch fermentation,more succinate and ethanol were produced compared with those using glucose,while producing less acetate and formate. The metabolic flux analysis results showed that the flux partitioning at PEP node was stable when glucose was replaced by sorbitol,but the flux partitioning at PYR and AcCoA nodes changed a lot because more reducing power(NADH) was generated to meet the more requirement the synthesis of succinate and ethanol.

Tissue culture of Salvia miltiorrhiza adventitious roots (Ⅱ)Effects of carbon, nitrogen, and phosphate sources on culture of Salvia miltiorrhiza adventitious roots / 中草药

Objective To study the effects of carbon, nitrogen, and phosphate sources on the growth of Salvia miltiorrhiza adventitious roots and the contents of tanshinone ⅡA and protocatechuic aldehyde. Methods The adventitious roots were obtained through tissue culture by manipulation of carbon, nitrogen, and phosphate sources and the contents of tanshinone ⅡA and protocatechuic aldehyde were determined by HPLC. Results Carbon, nitrogen, and phosphate sources were necessary for the culture of S. miltiorrhiza adventitious roots. The highest times of root multiplication were achieved at sucrose level of 30 g/L after 20 d culture, 60 g/L sucrose and low level sucrose were favorable for biosyntheses of tanshinone ⅡA and protocatechuic aldehyde, respectively. The highest root yield and tanshinone ⅡA content on day 25 were obtained by intermittent sugar adding during cultivation, and the production of adventitious roots and tanshinone ⅡA were 2.3-and 2.4-fold compared with those of control, respectively. The maximum root growth rate, contents of tanshinone ⅡA and protocatechuic aldehyde were achieved while NH4+-NO3-was 1∶4, 1∶4, and 1∶1, respectively when concentration of total nitrogen source was kept at 60 mmol/L. To compare with the control group, changing of KH2PO4 concentration could favor for the adventilious root growth, but high KH2PO4 concentration inhibited tanshinone ⅡA biosynthesis. ConclusionThe results show that various carbon, nitrogen, and phosphate sources have the significant effects on adventitious root culture of S. miltiorrhiza. The best carbon source and its concentration, nitrogen and phosphate sources for the growth of S. miltiorrhiza adventitious root and the synthesis of secondary metabolite are confirmed.

Study on Degrading Phenol by Immobilized Ralstonia metallidurans CH34 / 微生物学通报

The subject of this study is to improve the ability of Ralstonia metallidurans CH34, a phenol-degrading strain with anti-heavy metal feature by immobilization.The optimal conditions for immobilizing bacterial cells were obtained with cross act experiment. The phenol-degrading efficiency of immobilized Ralstonia metallidurans CH34 was investigated. Results show that phenol-degrading efficiency of immobilized cells is obviously superior to that of the free cells; The ability of its resistance to heavy metal have been greatly improved; When additional carbon sources were added in the simulated waste water, the immobilized R. metallidurans CH34 were affected less than the free cells.